PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001554.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 315aa    MW: 35771 Da    PI: 8.5362
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001554.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1293.5e-09571223389
                     FAR1  33 fvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                                Cs+eg+++ ++++         ++ ++r+r+++ tgCka+++ k   +  ++v+++e+ HnH +
  Itr_sc001554.1_g00004.1  57 ILCSREGYKNVTDSStlnvdeessSSFTKRRRVSNMTGCKARIVFKFIGSLGYVVKQCEKRHNHCI 122
                              57*******9999999999998877778889*********************************76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-757122IPR004330FAR1 DNA binding domain
PfamPF105512.5E-26190281IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDGVPSSSLN GVTSGTNLNT SNANSSNIEG GYSLDISPRM TEYWIPNCED GSKLKYILCS  60
REGYKNVTDS STLNVDEESS SSFTKRRRVS NMTGCKARIV FKFIGSLGYV VKQCEKRHNH  120
CISSVLAKQF LKVNRNIDVG HQKFIANCAT NVDFKNFNRD IRAYIIDEHL CKLFWADPVS  180
RKNFGCFGDV VSFDAMYQTN MYDMVFTPFT RIDNHKRSIT FAAGLLTKED IASYVWLFEH  240
FKKAMVAEPK VIVIDQDPTM RQAIPAVFKE ARHRFCMWHI MCKVGEKVGS VLRCVRLDWC  300
FGWTGEPGWT GVMDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18488KRRRV
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1268424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-33FAR1-related sequence 5